Class Specialization
Score Zero
Scoring scheme for chaining that set gap scores to 0
Score Zero |
Parameters
Type of the score values. |
Specialization of
Functions
Given a multiple alignment, this function calculates all kinds of alignment statistics. (Score) | |
Computes the best global alignment of the two sequences. (Score) | |
Computes the best local alignment of two sequences. (Score) | |
Refines (i.e. cuts into smaller parts) a set of pairwise segment matches in such a way that none of the segments partly overlap. They are either identical (fully overlapping) or non-overlapping. (Score) | |
Computes multiple local alignments of two sequences. (Score) | |
The score for aligning two values according to a scoring scheme. (Score) | |
Computes the best local alignment of the (two) sequences given in align. (Score) | |
Computes next best local alignment. (Score) | |
Given a multiple alignment, this function calculates the sum-of-pairs score. (Score) |
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de